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feat: add docs auto-linking & code folding in R Markdown reports#216

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kelly-sovacool wants to merge 2 commits intomainfrom
iss-213
Open

feat: add docs auto-linking & code folding in R Markdown reports#216
kelly-sovacool wants to merge 2 commits intomainfrom
iss-213

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@kelly-sovacool kelly-sovacool commented Mar 27, 2026

Changes

  • Use downlit for auto-linking function documentation websites.
  • Set code fold to 'hide', set echo=TRUE by default.
  • Standardize report author to CCBR.

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PR Checklist

(Strikethrough any points that are not applicable.)

  • This comment contains a description of changes with justifications, with any relevant issues linked.
  • [ ] Write tests using nf-test for any new features, bug fixes, or other code changes.
  • [ ] Update docs if there are any API changes.
  • [ ] If a new nextflow process is implemented, define the process container and stub.
  • Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/

@ccbr-bot ccbr-bot bot added the SINCLAIR label Mar 27, 2026
@kelly-sovacool kelly-sovacool requested a review from wong-nw March 27, 2026 19:39
@kelly-sovacool kelly-sovacool enabled auto-merge (squash) March 27, 2026 19:39
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link to R function documentation in Rmd reports

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